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atlantic_camtraps - ATLANTIC-CAMTRAPS: a dataset of medium and large terrestrial mammal communities in the Atlantic Forest of South America

Source: vignettes/articles/atlantic_camtraps.Rmd
atlantic_camtraps.Rmd

Dataset used

Introduction

The atlantic_camtraps dataset contains

Data exploration

Citations

Lima et al. 2017. ATLANTIC-CAMTRAPS: a dataset of medium and large terrestrial mammal communities in the Atlantic Forest of South America. Ecology, 98(11), 2979-2979. https://doi.org/10.1002/ecy.1998

How we processed the raw data

Download data from Ecology

# download
# download data from https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecy.1998

# unzip
unzip(zipfile = "data-raw/ecy1998-sup-0001-datas1.zip", exdir = "data-raw")

Data cleaning

# import data
atlantic_camtraps_location <- readr::read_csv("data-raw/ATLANTIC_CAMTRAPS_1-0_LOCATION.csv") %>%
    janitor::clean_names()
atlantic_camtraps_location

atlantic_camtraps_survey <- readr::read_csv("data-raw/ATLANTIC_CAMTRAPS_1-0_SURVEY.csv") %>%
    janitor::clean_names()
atlantic_camtraps_survey

atlantic_camtraps_species <- readr::read_csv("data-raw/ATLANTIC_CAMTRAPS_1-0_SPECIES.csv") %>%
    janitor::clean_names()
atlantic_camtraps_species

atlantic_camtraps_records <- readr::read_csv("data-raw/ATLANTIC_CAMTRAPS_1-0_RECORDS.csv") %>%
    janitor::clean_names()
atlantic_camtraps_records

# join data
atlantic_camtraps_location_survey <- dplyr::left_join(atlantic_camtraps_location, atlantic_camtraps_survey)
atlantic_camtraps_location_survey

atlantic_camtraps_species_records <- dplyr::left_join(atlantic_camtraps_species, atlantic_camtraps_records)
atlantic_camtraps_species_records

atlantic_camtraps <- dplyr::left_join(atlantic_camtraps_location_survey, atlantic_camtraps_species_records)
atlantic_camtraps